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Neutral atom arrays have become a promising platform for quantum computing, especially the field programmable qubit array (FPQA) endowed with the unique capability of atom movement. This feature allows dynamic alterations in qubit connectivity during runtime, which can reduce the cost of executing long-range gates and improve parallelism. However, this added flexibility introduces new challenges in circuit compilation. Inspired by the placement and routing strategies for FPGAs, we propose to map all data qubits to fixed atoms while utilizing movable atoms to route for 2-qubit gates between data qubits. Coined flying ancillas, these mobile atoms function as ancilla qubits, dynamically generated and recycled during execution. We present Q-Pilot, a scalable compiler for FPQA employing flying ancillas to maximize circuit parallelism. For two important quantum applications, quantum simulation and the Quantum Approximate Optimization Algorithm (QAOA), we devise domain-specific routing strategies. In comparison to alternative technologies such as superconducting devices or fixed atom arrays, Q-Pilot effectively harnesses the flexibility of FPQA, achieving reductions of 1.4x, 27.7x, and 6.3x in circuit depth for 100-qubit random, quantum simulation, and QAOA circuits, respectively. 

Quorum sensing is a chemical communication process that bacteria use to coordinate group behaviors. Pseudomonas aeruginosa, an opportunistic pathogen, employs multiple quorum sensing systems to control behaviors including virulence factor production and biofilm formation. One P. aeruginosa quorum-sensing receptor, called RhlR, binds the cognate autoinducer N-butryl homoserine lactone (C4HSL), and the RhlR:C4HSL complex activates transcription of target quorum-sensing genes. Here, we use a genetic screen to identify RhlR mutants that function independently of the autoinducer. The RhlR Y64F W68F V133F triple mutant, which we call RhlR*, exhibits ligand-independent activity in vitro and in vivo. RhlR* can drive wildtype biofilm formation and infection in a nematode animal model. The ability of RhlR* to properly regulate quorum-sensing-controlled genes in vivo depends on the quorum-sensing regulator RsaL keeping RhlR* activity in check. RhlR is known to function together with PqsE to control production of the virulence factor called pyocyanin. Likewise, RhlR* requires PqsE for pyocyanin production in planktonic cultures, however, PqsE is dispensable for RhlR*-driven pyocyanin production on surfaces. Finally, wildtype RhlR protein is not sufficiently stabilized by C4HSL to allow purification. However, wildtype RhlR can be stabilized by the synthetic ligand mBTL (meta bromo-thiolactone) and RhlR* is stable without a ligand. These features enabled purification of the RhlR:mBTL complex and of RhlR* for in vitro examination of their biochemical activities. To our knowledge, this work reports the first RhlR protein purification.